Glyma10g36220 - SoyBase

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Report for Sequence Feature Glyma10g36220

Feature Type:	gene_model
Chromosome:	Gm10
Start:	44432816
stop:	44437804
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g36220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71860	AT	Annotation by Michelle Graham. TAIR10: protein tyrosine phosphatase 1 \| chr1:27026866-27028675 FORWARD LENGTH=340	SoyBase	E_val: 8.00E-161	ISS
GO:0000303	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to superoxide	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0043407	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0033550	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase tyrosine phosphatase activity	SoyBase	N/A	ISS
KOG0789	KOG	Protein tyrosine phosphatase	JGI		ISS
PTHR19134	Panther	PROTEIN-TYROSINE PHOSPHATASE	JGI		ISS
PTHR19134:SF28	Panther	PROTEIN TYROSINE PHOSPHATASE	JGI		ISS
PF00102	PFAM	Protein-tyrosine phosphatase	JGI		ISS
UniRef100_I1LD92	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LD92_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82687	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine phosphatase 1 n=1 Tax=Glycine max RepID=O82687_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g36220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g36220

Paralog	Evidence	Comments
Glyma20g31390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g36220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g218100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g36220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g36220

Limit To All Plant Sequences

>Glyma10g36220.1   sequence type=CDS   gene model=Glyma10g36220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGGCAACCCCGCCACCACTTCCTCCTCCGCATTATCTCCCGAGAAATTTAATTTCAATTTCTCCCCCGATAACCCCTCCCGAATCACCCTCACTTCGGATCAGGTCAACCACTGCACCCAAGCCCTCAACATTCTGAAGGAGAAGCTCCACGCTCCTAACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACGCCGAGCGAGATGAGGAGAAGATGCACCGTCGCGTATGACGACGTCAATTTGAGGAAAAACCGATACACCGACGTTCTGCCATTTGACAAGAACAGGGTTGTTCTCAAATCTAGTACTGATTATAGACCTGAAGCACAGGGGTATATCAATGCAAGCCTTGTCTCGACCTCCTCAGCTGGAAACGTGTCCCAGTTTATAGCCACGCAAGGTCCACTTCAACATACTTACGAGGATTTCTGGGAAATGATCATCCAATATCACTGCCCTGCAATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGACAAAATGTGGAGATTATTTTCAAGCTGAGGATAGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTCGTGCTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGAAGATGCGCCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAAAGATACATTTGCTGTGCGTGAAATTCTGAAAAGATTATACCATTTACCACCAAACTTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATAGTTGCTGGTGATATGTCTGCTGTAGATATTGCTAAGACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAACGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAGTAG

Predicted protein sequences of Glyma10g36220

Limit To All Plant Sequences

>Glyma10g36220.1   sequence type=predicted peptide   gene model=Glyma10g36220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGNPATTSSSALSPEKFNFNFSPDNPSRITLTSDQVNHCTQALNILKEKLHAPNVITQEFAHLQANRITPSEMRRRCTVAYDDVNLRKNRYTDVLPFDKNRVVLKSSTDYRPEAQGYINASLVSTSSAGNVSQFIATQGPLQHTYEDFWEMIIQYHCPAIIMLTRLVDNYKMTKCGDYFQAEDRPREVGNISIIGKWENTTETSLVLRHLEVNHREVEDAPLSVLHIQYPEWPDHGVPKDTFAVREILKRLYHLPPNFGPIVVHCSAGIGRTGTYCTIHNTIQRIVAGDMSAVDIAKTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQ*

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